Analysis results for 1EVV.pdb
Annotating...done.
Finding helices...done.
Finding strands...done.
Residue conformations -------------------------------------------
A1 : G C2'_exo anti
A2 : C C3'_endo anti
A3 : G C3'_endo anti
A4 : G C3'_endo anti
A5 : A C3'_endo anti
A6 : U C3'_endo anti
A7 : U C2'_endo anti
A8 : U C3'_endo anti
A9 : A C2'_endo syn
A11 : C C3'_endo anti
A12 : U C3'_endo anti
A13 : C C3'_endo anti
A14 : A C2'_exo anti
A15 : G C3'_endo anti
A18 : G C2'_endo anti
A19 : G C2'_endo syn
A20 : G C2'_exo anti
A21 : A C3'_endo anti
A22 : G C2'_exo anti
A23 : A C3'_endo anti
A24 : G C3'_endo anti
A25 : C C3'_endo anti
A27 : C C3'_endo anti
A28 : C C3'_endo anti
A29 : A C3'_endo anti
A30 : G C3'_endo anti
A31 : A C3'_endo anti
A35 : A C2'_exo anti
A36 : A C3'_endo anti
A41 : U C2'_exo anti
A42 : G C3'_endo anti
A43 : G C3'_endo anti
A44 : A C3'_endo anti
A45 : G C3'_endo anti
A47 : U C2'_endo anti
A48 : C C2'_endo anti
A50 : U C3'_endo anti
A51 : G C3'_endo anti
A52 : U C3'_endo anti
A53 : G C3'_endo anti
A56 : C C3'_endo anti
A57 : G C3'_endo anti
A59 : U C3'_endo anti
A60 : C C2'_endo anti
A61 : C C3'_endo anti
A62 : A C3'_endo anti
A63 : C C3'_endo anti
A64 : A C3'_endo anti
A65 : G C3'_endo anti
A66 : A C3'_endo anti
A67 : A C3'_endo anti
A68 : U C3'_endo anti
A69 : U C3'_endo anti
A70 : C C3'_endo anti
A71 : G C3'_endo anti
A72 : C C3'_endo anti
A73 : A C3'_endo anti
A74 : C C3'_endo anti
A75 : C C3'_endo anti
A76 : A C3'_exo anti
Base-pairs ------------------------------------------------------
A1-A72 : G-C Ww/Ww pairing cis XIX
A2-A71 : C-G Ww/Ww pairing cis XIX
A3-A70 : G-C Ww/Ww pairing cis XIX
A4-A69 : G-U Ww/Ws pairing cis XXVIII
A5-A68 : A-U Ww/Ww pairing cis XX
A6-A67 : U-A Ww/Ww pairing cis XX
A7-A66 : U-A Ww/Ww pairing cis XX
A8-A14 : U-A Ww/Hh pairing trans XXIV
A9-A23 : A-A Hh/Hh pairing trans II
A11-A24 : C-G Ww/Ww pairing cis XIX
A12-A23 : U-A Ww/Ww pairing cis XX
A13-A22 : C-G Ww/Ww pairing cis XIX
A15-A48 : G-C Ww/Ww pairing trans XXII
A19-A56 : G-C Ww/Ww pairing cis XIX
A27-A43 : C-G Ww/Ww pairing cis XIX
A28-A42 : C-G Ww/Ww pairing cis XIX
A29-A41 : A-U Ww/Ww pairing cis XX
A50-A64 : U-A Ww/Ww pairing cis XX
A51-A63 : G-C Ww/Ww pairing cis XIX
A52-A62 : U-A Ww/Ww pairing cis XX
A53-A61 : G-C Ww/Ww pairing cis XIX
Base Triples ----------------------------------------------------
T1 A9-A23 A12-A23
Adjacent relations ----------------------------------------------
A1-A2 : stack adjacent
A2-A3 : stack adjacent
A3-A4 : stack adjacent
A4-A5 : stack adjacent
A5-A6 : stack adjacent
A6-A7 : stack adjacent
A7-A8 : adjacent
A8-A9 : adjacent
A11-A12 : stack adjacent
A12-A13 : stack adjacent
A13-A14 : adjacent
A14-A15 : stack adjacent
A18-A19 : adjacent
A19-A20 : adjacent
A20-A21 : adjacent
A21-A22 : adjacent
A22-A23 : stack adjacent
A23-A24 : stack adjacent
A24-A25 : stack adjacent
A27-A28 : stack adjacent
A28-A29 : stack adjacent
A29-A30 : stack adjacent
A30-A31 : stack adjacent
A35-A36 : stack adjacent
A41-A42 : adjacent
A42-A43 : stack adjacent
A43-A44 : stack adjacent
A44-A45 : stack adjacent
A47-A48 : adjacent
A50-A51 : stack adjacent
A51-A52 : stack adjacent
A52-A53 : adjacent
A56-A57 : stack adjacent
A59-A60 : stack adjacent
A60-A61 : adjacent
A61-A62 : adjacent
A62-A63 : stack adjacent
A63-A64 : stack adjacent
A64-A65 : stack adjacent
A65-A66 : stack adjacent
A66-A67 : stack adjacent
A67-A68 : stack adjacent
A68-A69 : stack adjacent
A69-A70 : adjacent
A70-A71 : stack adjacent
A71-A72 : stack adjacent
A72-A73 : stack adjacent
A73-A74 : stack adjacent
A74-A75 : stack adjacent
A75-A76 : adjacent
Non-Adjacent stackings ------------------------------------------
A1-A73 : stack
A3-A71 : stack
A9-A45 : stack
A18-A57 : stack
A19-A57 : stack
A21-A48 : stack
A29-A42 : stack
A51-A64 : stack
A53-A62 : stack
Helices ---------------------------------------------------------
H1, length = 7, type = X :
A1-GCGGAUU-A7
A72-CGCUUAA-A66
H2, length = 3, type = X :
A11-CUC-A13
A24-GAG-A22
H3, length = 3, type = X :
A27-CCA-A29
A43-GGU-A41
H4, length = 4, type = A :
A50-UGUG-A53
A64-ACAC-A61
Strands ---------------------------------------------------------
S1 single strand: A8-UA-A9
S2 single strand: A14-AG-A15
S3 single strand: A18-GGGA-A21
S4 single strand: A25-C-A25
S5 single strand: A30-GA-A31
S6 single strand: A35-AA-A36
S7 single strand: A44-AG-A45
S8 single strand: A47-UC-A48
S9 single strand: A56-CG-A57
S10 single strand: A59-UC-A60
S11 single strand: A65-G-A65
S12 single strand: A73-ACCA-A76
Tertiary base-pairs ---------------------------------------------
strand/strand: A8-A14
strand/helix: A9-A23
strand/strand: A15-A48
strand/strand: A19-A56
Sequences -------------------------------------------------------
Sequence 1 (length = 9):
A1 GCGGAUUUA
(((((((bb
ter -------XX
Sequence 2 (length = 5):
A11 CUCAG
(((bb
ter ---XX
Sequence 3 (length = 8):
A18 GGGAGAGC
-b--)))-
ter -X---X--
Sequence 4 (length = 5):
A27 CCAGA
(((--
ter -----
Sequence 5 (length = 2):
A35 AA
--
ter --
Sequence 6 (length = 5):
A41 UGGAG
)))--
ter -----
Sequence 7 (length = 2):
A47 UC
-b
ter -X
Sequence 8 (length = 4):
A50 UGUG
((((
ter ----
Sequence 9 (length = 2):
A56 CG
b-
ter X-
Sequence 10 (length = 18):
A59 UCCACAGAAU UCGCACCA
--))))-))) ))))----
ter ---------- --------
Sequence 11 (length = 1):
A33 U
-
ter -
Sequence 12 (length = 1):
A38 A
-
ter -
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